hammerlab / genomic-loci   1.4.4

Apache License 2.0 GitHub

Utilities for representing genomic loci and reference-genomes

Scala versions: 2.11 2.10


Build Status Coverage Status Maven Central

Utilities for working with genomic loci.

  • parsing: utilities for parsing string-representations of loci.
  • set: LociSet data-structure: stores genomic-loci ranges and allows for intersection/containment checks.
  • map: LociMap data-structure: allows for mapping genomic ranges to arbitrary values.
  • iterator: iterators for traversing genomic loci.