biopet / samplestsvtoconfig   0.1

MIT License Website GitHub

Deprecated tool, please use SampleConfig

Scala versions: 2.11


This tool enables a user to create a full sample sheet in JSON format or YAML format, suitable for all Biopet Queue pipelines, from TSV file(s).


For documentation and manuals visit our page.


SamplesTsvToConfig is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.


For any question related to SamplesTsvToConfig, please use the github issue tracker or contact the SASC team directly at: [email protected].