This tool converts the Kraken-report output into a JSON format. The tool can output to file or stdout. This allows the report to be used in pipelines.


For documentation and manuals visit our page.


KrakenReportToJson is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.


For any question related to KrakenReportToJson, please use the github issue tracker or contact the SASC team directly at: [email protected].