This tool makes a bed file with the positions from the input GVCF file. It selects the regions of a certain genome quality treshold.


For documentation and manuals visit our github.io page.


GvcfToBed is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.


For any question related to GvcfToBed, please use the github issue tracker or contact the SASC team directly at: [email protected].