This tool generates Fasta files out of variant (SNP) alignments or full alignments (consensus). It can be very useful to produce the right input needed for follow up tools, for example phylogenetic tree building.


For documentation and manuals visit our page.


BastyGenerateFasta is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.


For any question related to BastyGenerateFasta, please use the github issue tracker or contact the SASC team directly at: [email protected].